ydcQ
168
coupling protein, part of the type IV secretion system for DNA transfer
locus
BSU_04860
Molecular weight
54.57 kDa
pI
9.28
function
conjugative transfer of ICEBs1
product
coupling protein, part of the type IV secretion system for DNA transfer
essential
no
ec
null
synonyms
ydcQ, conQ
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1674 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
533,338 534,780
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The protein
[wiki|Domains]
[wiki|FtsK domain] (aa 217-399) (according to UniProt)
Structure
[PDB|6O1X] (from Clostridium perfringens, corresponds to aa 219 ... 396, 27% identity)
[AF|P96634]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]-[gene|2227923C603B290AB276238F789D71584FB07DF3|ydzL]-[gene|34451538F10B4ABCFC8A236C8C905A20D989EBCF|devI]-[gene|C042792D9A643DCFF4A851EFECA3CF2C31E1EDAF|ydcP]-[gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]-[gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]-[gene|886B2132717BA4C72433ABE351C5791C9DE1432A|S172]-[gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]-[gene|9D4918852A1856B1CDD72D49AEA75E51A8602BB6|ydcT]-[gene|62CEABA069CA2970F22B7E0C369D540A2A027A8D|yddA]-[gene|A0AFD543582D2FE8B1139CF69B7B1F7FF0F80265|conB]-[gene|F273A8817E66B44D58FC2BCB6576A30D8616B750|conC]-[gene|F1F898D7A9FDF78D2E5E8F3BF605E0F735D0542A|conD]-[gene|D20F724D8C3E8C758A9FADF133CD43F066BD8D48|conE]-[gene|B3A07E2A61151C33B7C65D1BC58B97BFDB76852D|yddF]-[gene|3356A43B83E2D4D66098F17A751F0912C1553398|conG]-[gene|8D9D81E05BAA8697F002BB1B8DBC5ABBA557353F|cwlT]-[gene|2E4FF80C857B3F40BA835814EC40D6562721AEFE|yddI]-[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]
description
[pubmed|22383849]
regulatory mechanism
[protein|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR]: repression, [Pubmed|17511812], in [regulon|protein:DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR regulon]
Biological materials
Mutant
BKE04860 ([gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATACATCACCCGCCTGC, downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
BKK04860 ([gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATACATCACCCGCCTGC, downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
References
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Time of last update: 2024-04-19 18:40:04
Author of last update: Jstuelk