ydfD
168
similar to transcriptional regulator ([wiki|MocR/ GabR family])
locus
BSU_05370
Molecular weight
54.07 kDa
pI
9.1
function
unknown
product
unknown
essential
no
synonyms
ydfD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1167 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
583,589 → 585,037
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The protein
Protein family
[wiki|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
[wiki|MocR/ GabR family] [Pubmed|22020104]
[wiki|Domains]
N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
[wiki|HTH gntR-type domain] (aa 12-80) (according to UniProt)
[wiki|Cofactors]
PLP
Structure
[PDB|1WST] (aminotransferase from Thermococcus profundus, 30% identity)
[AF|P96681]
Paralogous protein(s)
[protein|6A3F08CD939CCDEC1F784D658B815A6D0E1AAC3D|yisV]
Biological materials
Mutant
MGNA-C144 (ydfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2142 NBRP B. subtilis, Japan]
BKE05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
BKK05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
References
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Time of last update: 2024-04-18 19:54:38
Author of last update: Melvin.boenninger