yvdD

yvdD
168

putative lysine decarboxylase

locus
BSU_34640
Molecular weight
20.91 kDa
pI
5.09
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
yvdD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1611 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,558,940 → 3,559,515
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The protein
Protein family
LOG family (single member, according to UniProt)
Structure
[PDB|1T35]
[AF|O06986]
Additional information
Detected in spores. [Pubmed|12480901]
Expression and Regulation
Operons
genes
[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]
description
[Pubmed|22383849]
additional information
Putative NrdR-box located between [protein|search|YvdC] and [protein|search|YvdD], suggesting transcriptional regulation by NrdR ([protein|search|YtcG]). [Pubmed|15949864]
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[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]

2023-12-04 23:52:59

ghost

27

0a228a9bc086f768d2f49719cd433a7a8f986123

BBE8A408B0227A7620320584C9D817DD9CAE2586

Biological materials
Mutant
MGNA-B629 (yvdD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1628 NBRP B. subtilis, Japan]
BKE34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE34640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
BKK34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK34640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
References
12480901,15949864,22383849

B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B

Page visits: 1246

Time of last update: 2024-03-27 21:38:37

Author of last update: Melvin.boenninger