SubtiBank SubtiBank
ybgB
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ybgB

putative immunity protein
locus
BSU_02380
pI
8.47
mw
10.14 kDa
protein length
gene length
276 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    258,532 258,807

    The protein

    Paralogous protein(s)

  • [protein|3FB5839A7A80CF52E627FF1744E50490F5CC390F|SdpI], [protein|2B7F65B145005A8ADD2A278E3EA5A52DF162C837|YfhL]
  • [SW|Localization]

  • cell membrane (according to UniProt)
  • Expression and Regulation

    Operons

    genes
    [gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]
    description
    [Pubmed|12897008]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|23667565], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY]: sigma factor, [Pubmed|12897008], in [regulon|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY regulon]
  • regulatory mechanism

  • [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR]: repression, [Pubmed|24673833,23667565], in [regulon|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR regulon]
  • regulation

  • induced by glucosamine ([protein|search|gamR]) [Pubmed|24673833,23667565]
  • view in new tab

    genes
    [gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]-[gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]
    description
    [Pubmed|23667565]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|23667565], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • regulatory mechanism

  • [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR]: repression, [Pubmed|24673833,23667565], in [regulon|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR regulon]
  • regulation

  • induced by glucosamine ([protein|search|gamR]) [Pubmed|24673833,23667565]
  • induced by glucosamine ([protein|search|GamR]) [Pubmed|24673833,23667565]
  • view in new tab

    Biological materials

    Mutant

  • BKE02380 ([gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCACCATTCCCTT, downstream forward: _UP4_TAAATCAAACAGCCAGAATA
  • BKK02380 ([gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCACCATTCCCTT, downstream forward: _UP4_TAAATCAAACAGCCAGAATA
  • References

  • 12897008,24673833,23667565