SAVE THE DATE! 21st International Conference on Bacilli and Gram-Positive Bacteria. Prague, Czech Republic, June 7-11, 2021.

ybgB

putative immunity protein

locus: BSU_02380

pI: 8.47

mw: 10.14 kDa

protein length: 91 aa

gene length: 276 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 258,532 258,807

The protein

Paralogous protein(s)

• [protein|3FB5839A7A80CF52E627FF1744E50490F5CC390F|SdpI], [protein|2B7F65B145005A8ADD2A278E3EA5A52DF162C837|YfhL]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]
  description: [Pubmed|12897008]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|23667565], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY]: sigma factor, [Pubmed|12897008], in [regulon|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY regulon]

  regulatory mechanism

  • [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR]: repression, [Pubmed|24673833,23667565], in [regulon|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR regulon]

  regulation

  • induced by glucosamine ([protein|search|gamR]) [Pubmed|24673833,23667565]

• genes: [gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]-[gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]
  description: [Pubmed|23667565]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|23667565], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  regulatory mechanism

  • [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR]: repression, [Pubmed|24673833,23667565], in [regulon|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR regulon]

  regulation

  • induced by glucosamine ([protein|search|gamR]) [Pubmed|24673833,23667565]
  • induced by glucosamine ([protein|search|GamR]) [Pubmed|24673833,23667565]

Biological materials

Mutant

• BKE02380 ([gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCACCATTCCCTT, downstream forward: _UP4_TAAATCAAACAGCCAGAATA
• BKK02380 ([gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCACCATTCCCTT, downstream forward: _UP4_TAAATCAAACAGCCAGAATA

References

• 12897008,24673833,23667565