SubtiBank SubtiBank
ykcB
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ykcB

unknown
locus
BSU_12880
pI
9.53
mw
76.28 kDa
protein length
716 aa Sequence Blast
gene length
2151 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.9|Newly identified competence genes]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    1,354,285 1,356,435

    Phenotypes of a mutant

  • poorly transformable [pubmed|28189581]

    • The protein

    Protein family

  • glycosyltransferase 39 family (with [protein|CFEA05E10517C00222126F959A1D2DCE7604E478|YycA], according to UniProt)

    • Paralogous protein(s)

  • [protein|CFEA05E10517C00222126F959A1D2DCE7604E478|YycA]

    • Expression and Regulation

    Operons

    genes
    [gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]-[gene|FD76A781162795EAF174B59C0A90D2ED3ACC0AB7|ykcC]
    description
    [Pubmed|18175906]

    regulatory mechanism

  • [protein|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ]: activation, [Pubmed|20512483], in [regulon|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ regulon]
  • [protein|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP]: activation, [Pubmed|18175906], in [regulon|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP regulon]
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    Biological materials

    Mutant

  • MGNA-A738 (ykcB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/738 NBRP B. subtilis, Japan]
  • BKE12880 ([gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTATTTTTCACTCCTTT, downstream forward: _UP4_GCTGATGAATAGGAGGCAAA
  • BKK12880 ([gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTATTTTTCACTCCTTT, downstream forward: _UP4_GCTGATGAATAGGAGGCAAA

    • References

  • 20512483,18175906,28189581