ykcB

unknown

locus: BSU_12880

pI: 9.53

mw: 76.28 kDa

protein length: 716 aa

gene length: 2151 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.9|Newly identified competence genes]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 1,354,285 1,356,435

Phenotypes of a mutant

• poorly transformable [pubmed|28189581]

The protein

Protein family

• glycosyltransferase 39 family (with [protein|CFEA05E10517C00222126F959A1D2DCE7604E478|YycA], according to UniProt)

Paralogous protein(s)

• [protein|CFEA05E10517C00222126F959A1D2DCE7604E478|YycA]

Expression and Regulation

Operons

• genes: [gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]-[gene|FD76A781162795EAF174B59C0A90D2ED3ACC0AB7|ykcC]
  description: [Pubmed|18175906]

  regulatory mechanism

  • [protein|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ]: activation, [Pubmed|20512483], in [regulon|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ regulon]
  • [protein|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP]: activation, [Pubmed|18175906], in [regulon|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP regulon]

Biological materials

Mutant

• MGNA-A738 (ykcB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/738 NBRP B. subtilis, Japan]
• BKE12880 ([gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTATTTTTCACTCCTTT, downstream forward: _UP4_GCTGATGAATAGGAGGCAAA
• BKK12880 ([gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTATTTTTCACTCCTTT, downstream forward: _UP4_GCTGATGAATAGGAGGCAAA

References

• 20512483,18175906,28189581