SubtiBank SubtiBank
ydgG
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ydgG

similar to transcriptional regulator ([SW|MarR family])
locus
BSU_05640
pI
5.62
mw
17.13 kDa
protein length
152 aa Sequence Blast
gene length
459 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • Gene

    Coordinates
    608,933 609,391

    The protein

    Protein family

  • [SW|MarR family]
  • [SW|Domains]

  • [SW|HTH marR-type domain] (aa 3-143) (according to UniProt)
  • Expression and Regulation

    Operons

    genes
    [gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]-[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]
    description
    [Pubmed|16267290]

    regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]
  • regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]
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    Biological materials

    Mutant

  • MGNA-C160 (ydgG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2158 NBRP B. subtilis, Japan]
  • CS209 (''[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]''::''aphA3'', available in [SW|Colin Harwood]'s and [SW|Jörg Stülke]'s labs) [Pubmed|27197833]
  • BKE05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC
  • BKK05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC
  • References

  • 16267290,27197833