SubtiBank SubtiBank
yvdT
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yvdT

similar to transcriptional regulator ([SW|TetR family])
locus
BSU_34480
pI
5.30
mw
22.08 kDa
protein length
194 aa Sequence Blast
gene length
585 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • Gene

    Coordinates
    3,540,822 3,541,406

    The protein

    Protein family

  • [SW|TetR family]
  • [SW|Domains]

  • [SW|HTH tetR-type domain] (aa 6-66) (according to UniProt)
  • Structure

  • [PDB|2F07]
  • Expression and Regulation

    Operons

    genes
    [gene|8417C205E756C27D25BCEA9394DEB0968B5F4F7B|yvdT]-[gene|FDE9E1E86BA06B4CE782CBA32F113D302A0B2231|yvdS]-[gene|18CBED273AD7787971073117DFA0B89BDF149B25|yvdR]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|8417C205E756C27D25BCEA9394DEB0968B5F4F7B|yvdT]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B616 (yvdT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1615 NBRP B. subtilis, Japan]
  • BKE34480 ([gene|8417C205E756C27D25BCEA9394DEB0968B5F4F7B|yvdT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAGGAACACCTCCAGTA, downstream forward: _UP4_TAAAAAATGACTGGGTAACA
  • BKK34480 ([gene|8417C205E756C27D25BCEA9394DEB0968B5F4F7B|yvdT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAGGAACACCTCCAGTA, downstream forward: _UP4_TAAAAAATGACTGGGTAACA
  • References

    Reviews

  • 24006471