SubtiBank SubtiBank
yybE
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yybE

similar to transcriptional regulator ([SW|LysR family])
locus
BSU_40670
pI
7.30
mw
31.26 kDa
protein length
292 aa Sequence Blast
gene length
879 bp Sequence Blast
function
unknown
product
transcriptional regulator ([SW|LysR family])
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • Gene

    Coordinates
    4,180,564 4,181,442

    The protein

    Protein family

  • [SW|LysR family] (according to UniProt)
  • Structure

  • [PDB|4X6G] (OxyR from Pseudomonas aeruginosa, 28% identity) [pubmed|25931525]
  • Expression and Regulation

    Operons

    genes
    [gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]-[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]-[gene|33C3EDF3709AC835C9C50B1B7978BA7C23EC9B9E|yybC]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B849 (yybE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1848 NBRP B. subtilis, Japan]
  • BKE40670 ([gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTATCATCTCTCCTTAT, downstream forward: _UP4_TTTTCTGAGTAGGAAGGATT
  • BKK40670 ([gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTATCATCTCTCCTTAT, downstream forward: _UP4_TTTTCTGAGTAGGAAGGATT
  • References

    Research papers

  • 25931525