SubtiBank SubtiBank
yxbC
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yxbC

unknown
locus
BSU_39880
pI
4.59
mw
37.30 kDa
protein length
330 aa Sequence Blast
gene length
993 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yxaQ
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,095,915 4,096,907

    The protein

    Protein family

  • ROX family (single member, according to UniProt)

    • [SW|Domains]

  • JmjC domain (aa 96-256) (according to UniProt)

    • Structure

  • [PDB|1VRB]

    • Expression and Regulation

    Operons

    genes
    [gene|A9815CF5DA9D8852F387DAF94CC26E95F1E4AC25|yxbC]-[gene|4DB53AE08A4E4841D0411A5590CC09A6ECC8E74E|yxbD]
    description
    [Pubmed|10746760]

    regulatory mechanism

  • [protein|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A]: activation, [Pubmed|14651647], in [regulon|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A regulon]
  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12618455], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|15101989], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • expressed under conditions that trigger sporulation ([SW|Spo0A]) [Pubmed|14651647]
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    Biological materials

    Mutant

  • MGNA-B691 (yxbC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1690 NBRP B. subtilis, Japan]
  • BKE39880 ([gene|A9815CF5DA9D8852F387DAF94CC26E95F1E4AC25|yxbC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTATCCCTCCCAAAAA, downstream forward: _UP4_TAGTAAATACTAGATAAGGG
  • BKK39880 ([gene|A9815CF5DA9D8852F387DAF94CC26E95F1E4AC25|yxbC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTATCCCTCCCAAAAA, downstream forward: _UP4_TAGTAAATACTAGATAAGGG

    • References

  • 10746760,18083814,12618455,14651647,12618455,15101989