SubtiBank SubtiBank
ybfF
The second international online conference #Subtillery2021 will be held 14th - 18th June - save the date, for more information see the conference website!

The 21st International Conference on Bacilli has been postponed to 2022 and will take place in Prague.

ybfF

unknown
locus
BSU_02190
pI
9.67
mw
35.16 kDa
protein length
303 aa Sequence Blast
gene length
912 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • Gene

    Coordinates
    238,644 → 239,555

    The protein

    [SW|Localization]

  • cell membrane (according to UniProt)
  • Expression and Regulation

    Operons

    genes
    [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]-[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]-[gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]
    description
    [Pubmed|22383849]

    regulation

  • the mRNA is processed between [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG] and [gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-B967 (ybfF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1966 NBRP B. subtilis, Japan]
  • BKE02190 (Δ[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02190 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTGATAAACCTCCAA, downstream forward: _UP4_TAATTTTGTTTCATCCTTAC
  • BKK02190 (Δ[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02190 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTGATAAACCTCCAA, downstream forward: _UP4_TAATTTTGTTTCATCCTTAC
  • References

    Research papers

  • 29794222