SubtiBank SubtiBank
yhdI
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yhdI

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU_09480
pI
6.80
mw
52.60 kDa
protein length
469 aa Sequence Blast
gene length
1410 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • Gene

    Coordinates
    1,026,255 → 1,027,664

    The protein

    Protein family

  • [SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
  • [SW|MocR/ GabR family ][Pubmed|22020104]
  • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • [SW|Cofactors]

  • PLP
  • Structure

  • [PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], 40% identity) [pubmed|24127574]
  • Expression and Regulation

    Operons

    genes
    [gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B480 (yhdI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1479 NBRP B. subtilis, Japan]
  • BKE09480 (Δ[gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
  • BKK09480 (Δ[gene|D0498CC264FFC4B4C0DECAEBBBB884DB1122A4B2|yhdI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA, downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
  • References

  • 11756427,22020104,24127574