SubtiBank SubtiBank
ysdC
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ysdC

similar to endo-1,4-beta-glucanase
locus
BSU_28820
pI
5.55
mw
39.06 kDa
protein length
361 aa Sequence Blast
gene length
1086 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.27|Utilization of other polymeric carbohydrates]
  • Gene

    Coordinates
    2,950,221 → 2,951,306

    The protein

    Protein family

  • Peptidase M42 family (with [protein|EDD5ACB89661D3B6D77057863EF345EBF84F49B2|YhfE] and [protein|16585F4118F3D2732D6780D351B7AA5F6DDCCEB8|YtoP], according to UniProt)
  • Paralogous protein(s)

  • [protein|16585F4118F3D2732D6780D351B7AA5F6DDCCEB8|YtoP]
  • Structure

  • [PDB|1VHE]
  • [SW|Localization]

  • secreted (according to Swiss-Prot)
  • additional information

  • belongs to the 100 [SW|most abundant proteins] [PubMed|15378759]
  • Expression and Regulation

    Operons

    genes
    [gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A999 (ysdC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/999 NBRP B. subtilis, Japan]
  • BKE28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG
  • BKK28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG
  • References

  • 15378759