rpmE

rpmE
168

ribosomal protein bL31

locus
BSU_37070
Molecular weight
7.31 kDa
pI
9.16
Protein length
Gene length
function
translation
product
ribosomal protein L31 (bL31)
essential
no
synonyms
rpmE

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0254 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,803,081  3,803,281
Phenotypes of a mutant
delayed spore [wiki|germination] [Pubmed|25661487]
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The protein
Protein family
bacterial [wiki|ribosomal protein] bL31 family (with [protein|DAE7AB27A4C42BF50556BB76F33BEFA8DF35EA3A|rpmEB], according to UniProt)
[wiki|Cofactors]
requires zinc for activity [Pubmed|19648245,15049826]
Structure
[PDB|3J9W] (the [wiki|ribosome]) [Pubmed|25903689]
[AF|Q03223]
Paralogous protein(s)
[protein|DAE7AB27A4C42BF50556BB76F33BEFA8DF35EA3A|rpmEB]
Additional information
under conditions of zinc starvation, RpmE is replaced by its paralog [protein|DAE7AB27A4C42BF50556BB76F33BEFA8DF35EA3A|rpmEB], that does not require zinc [Pubmed|15049826]
this ribosomal protein is lacking in some organisms with very small genomes [pubmed|33753464]
Expression and Regulation
Operons
genes
[gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]
description
[Pubmed|9353933]
regulation
[protein|search|RelA] dependent downregulation (Class I) during stringent response [Pubmed|11948165]
regulatory mechanism
stringent response: negative regulation, in [regulon|other_regulator:stringent response|stringent response]
[protein|035154A4160F084BA1CC124D0951937B203E167D|rpmE]: autorepression, [pubmed|32448158], in [regulon|protein:035154A4160F084BA1CC124D0951937B203E167D|rpmE regulon]
Open in new tab

[gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]

2024-03-14 12:04:19

ghost

64

90355083676e342c66a79dd6260611a7839d5c8d

48FC667F4ACD0863D4D01F24E01D681C9237B876

genes
[gene|7CD46C64BE69EDADF58B634DC50C3F61BFFEC5B5|rho]-[gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]
description
[pubmed|22383849]
Open in new tab

[gene|7CD46C64BE69EDADF58B634DC50C3F61BFFEC5B5|rho]→[gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]

2024-03-10 09:01:00

Jstuelk

80

64fa041f2672c7788b782f58b6b0099d088adcfa

FCFBD42F1FD2067C74E71BD492FF864F6BD1C74A

Biological materials
Mutant
BKE37070 ([gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE37070 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGTATCCATCTCCTTCC,  downstream forward: _UP4_TAATAATAGATTTCTCAACA
BKK37070 ([gene|035154A4160F084BA1CC124D0951937B203E167D|rpmE]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK37070 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGTATCCATCTCCTTCC,  downstream forward: _UP4_TAATAATAGATTTCTCAACA
References
36815589,17163968,15049826,19648245,19653700,20208344,23002217,25661487,25903689,32448158,33753464

035154A4160F084BA1CC124D0951937B203E167D

Page visits: 4540

Time of last update: 2024-03-28 20:02:39

Author of last update: Jstuelk