ydbS

168

resistence against antimicrobial compounds from B. amyloliquefaciens

locus: BSU_04590

Molecular weight: 17.98 kDa

pI: 8.13

Protein length: 159 aa

Gene length: 480 bp

function: confers resistence against antimicrobial compounds from B. amyloliquefaciens

product: unknown

essential: no

ec: null

synonyms: ydbS

List of homologs in different organisms, belongs to COG3402 (Galperin et al., 2021)

Gene

Coordinates: 512,814 → 513,293

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The protein

Protein family

• UPF0699 family (with [protein|15CD9023540E3BB7D3EC8A60E204052DD256CE9F|ydbT], according to UniProt)

Structure

• [AF|P96615]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]-[gene|15CD9023540E3BB7D3EC8A60E204052DD256CE9F|ydbT]

  description: [Pubmed|11866510]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW]: sigma factor, [Pubmed|12207695], in [regulon|protein:3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW regulon]

Biological materials

Mutant

• MGNA-C100 (ydbS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2098 NBRP B. subtilis, Japan]
• BKE04590 (Δ[gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04590 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACCTACCTCCCTT,  downstream forward: _UP4_TCCCGTCTGGCGAGGGTGAC
• BKK04590 (Δ[gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04590 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACCTACCTCCCTT,  downstream forward: _UP4_TCCCGTCTGGCGAGGGTGAC

References

• 16629676,12207695,11866510