yjdF

168

unknown

locus: BSU_12030

Molecular weight: 18.68 kDa

pI: 10.56

Protein length: 160 aa

Gene length: 483 bp

function: unknown

product: unknown

essential: no

synonyms: yjdF

List of homologs in different organisms

Gene

Coordinates: 1,275,809  1,276,291

Advertisement

The protein

Structure

• [AF|O31647]

Expression and Regulation

Operons

• genes: [gene|575CEC5C5C0458DC86A74F24654AC6990CB1E732|manP]-[gene|E26C70893C5D677C816C814558CC42F90B920087|manA]-[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]

  description: [Pubmed|20139185]

  regulation

  • induced by mannose ([protein|F273002AF97D87BB025B4F014C328C5592EAD621|manR]) [Pubmed|20139185]
  • expession may be controlled by a potential RNA switch located in the 5' untranslated region of the [gene|575CEC5C5C0458DC86A74F24654AC6990CB1E732|manP]-[gene|E26C70893C5D677C816C814558CC42F90B920087|manA]-[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF] mRNA between [gene|E26C70893C5D677C816C814558CC42F90B920087|manA] and [gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]

  regulatory mechanism

  • [protein|F273002AF97D87BB025B4F014C328C5592EAD621|manR]: activation, in the presence of mannose and absence of glucose [Pubmed|20139185], in [regulon|protein:F273002AF97D87BB025B4F014C328C5592EAD621|manR regulon]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|20139185], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]

Biological materials

Mutant

• MGNA-A268 (yjdF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/268 NBRP B. subtilis, Japan]
• BKE12030 ([gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE12030 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAATCATGCATCCG,  downstream forward: _UP4_TAATCCAAACAAAAGCAGGC
• BKK12030 ([gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK12030 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAATCATGCATCCG,  downstream forward: _UP4_TAATCCAAACAAAAGCAGGC

References

• 20139185,20230605,29223402,26843526