ymaD

ymaD
168

putative peroxiredoxin

locus
BSU_17280
Molecular weight
16.13 kDa
pI
5.2
Protein length
Gene length
function
protection against oxidative stress
product
putative peroxiredoxin
essential
no
synonyms
ymaD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1764 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,864,225  1,864,677
Phenotypes of a mutant
strongly increased the sensitivity of the cells to H2O2 [Pubmed|25649915]
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The protein
Protein family
osmC/ohr family (with [protein|C36DD4B670D803C5700428F62E6CA7ED127E4B41|ohrB] and [protein|869E46AECF6249610F8541E403D834284B62171D|ohrA], according to UniProt)
Structure
[PDB|3I07] (from Vibrio cholerae, 25% identity)
[AF|O31790]
Expression and Regulation
Operons
genes
[gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]
description
[Pubmed|22383849]
Open in new tab

[gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]

2024-03-09 15:01:01

ghost

31

76c5231ac737d01486aaca585cbe82b493ecfc54

6A4790A6961B2C82391E8D48AF0EBF406B90D1AA

genes
[gene|DF95DED9A6E2160C151D7664C951B198EEA225E8|pghC]-[gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]
description
[Pubmed|22383849]
Open in new tab

[gene|DF95DED9A6E2160C151D7664C951B198EEA225E8|pghC]→[gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]

2024-02-14 09:04:56

Jstuelk

48

421f3eda0dad0f3d643d46ad051f5cbb06aee0ad

B56AC4E4406607C2841B943636B533B0CA84B13D

Biological materials
Mutant
GP3166 [gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]::mls trpC2 available in [wiki|Jörg Stülke]'s lab
MGNA-B069 (ymaD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1068 NBRP B. subtilis, Japan]
BKE17280 ([gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE17280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGTTTTGCCTCCTTTTT,  downstream forward: _UP4_GGTGGAGAATAAAGAAAACA
BKK17280 ([gene|0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186|ymaD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK17280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGTTTTGCCTCCTTTTT,  downstream forward: _UP4_GGTGGAGAATAAAGAAAACA
References
22383849,25649915

0785B4C70C3DD00EFB8BCDD91EF4F98EF4372186

Page visits: 1357

Time of last update: 2024-03-29 09:27:17

Author of last update: Melvin.boenninger