ytcP

ytcP
168

polygalacturonan and rhamnogalacturonan [wiki|ABC transporter] (permease)

locus
BSU_30170
Molecular weight
31.54 kDa
pI
9.06
Protein length
Gene length
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [wiki|ABC transporter] (permease)
essential
no
synonyms
ytcP

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0395 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,087,321  3,088,181
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The protein
Protein family
[wiki|Binding-protein-dependent transport system permease family] (according to UniProt)
[wiki|CysTW subfamily] (according to UniProt)
[wiki|Domains]
[wiki|ABC transmembrane type-1 domain] (aa 69-271) (according to UniProt)
Structure
[PDB|4TQU] (from Sphingomonas sp., 36% identity) [pubmed|26235029]
[AF|P53561]
Paralogous protein(s)
[protein|0A7FF3E2747598AE0EE39183E8827879C4B11A80|lplC]
[wiki|Localization]
cell membrane [Pubmed|10092453]
Expression and Regulation
Operons
genes
[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]-[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]
description
[Pubmed|22383849]
Open in new tab

[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]→[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]

2024-03-14 11:09:25

Jstuelk

37

1bfed26a69ff416d6b5ceb7cda2d7e3bd1c23853

0AAE49721F036B257F10AD8230746702AAB5D9AC

additional information
translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]
Biological materials
Mutant
MGNA-B536 (ytcP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1535 NBRP B. subtilis, Japan]
BKE30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC,  downstream forward: _UP4_TAAAGAAATATGAAACGGAG
BKK30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC,  downstream forward: _UP4_TAAAGAAATATGAAACGGAG
References
36815589,10092453,22383849,26235029,29240795

87B212C8C61483DF2874762A3B77111616C616A5

Page visits: 3365

Time of last update: 2024-03-28 19:25:49

Author of last update: Jstuelk