Difference between revisions of "RnhC"

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* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2D0B 2D0B] (complex with Mg2+, Geobacillus stearothermophilus , 47% identity),  [http://www.rcsb.org/pdb/explore.do?structureId=2D0A 2D0A] (Geobacillus stearothermophilus, 47% identity)
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2D0B 2D0B] (complex with Mg2+, Geobacillus stearothermophilus , 47% identity),  [http://www.rcsb.org/pdb/explore.do?structureId=2D0A 2D0A] (Geobacillus stearothermophilus, 47% identity)
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P94541 P94541]
+
* '''UniProt:''' [http://www.uniprot.org/uniprot/P94541 P94541]
  
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28620]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28620]

Revision as of 14:00, 20 July 2009

  • Description: RNase HIII, endoribonuclease

Gene name rnhC
Synonyms ysgB
Essential no
Product Mg2+-dependent RNase HIII
Function endonucleolytic cleavage of RNA
in RNA-DNA hybrid molecules
MW, pI 33 kDa, 10.07
Gene length, protein length 939 bp, 313 aa
Immediate neighbours yshA, pheT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RnhC context.gif
This image was kindly provided by SubtiList





The gene

Basic information

  • Locus tag: BSU28620

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Endonucleolytic cleavage to 5'-phosphomonoester (according to Swiss-Prot)
  • Protein family: RnhC subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure: 2D0B (complex with Mg2+, Geobacillus stearothermophilus , 47% identity), 2D0A (Geobacillus stearothermophilus, 47% identity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References