Difference between revisions of "Rph"
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| − | * '''Description:''' RNase PH<br/><br/> | + | * '''Description:''' [[RNase]] PH<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || [[RNase]] PH (EC 2.7.7.56) |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || 3'-5' exoribonuclease | |style="background:#ABCDEF;" align="center"|'''Function''' || 3'-5' exoribonuclease | ||
| Line 54: | Line 54: | ||
* '''Catalyzed reaction/ biological activity:''' tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate (according to Swiss-Prot) 3'-5' exoribonuclease | * '''Catalyzed reaction/ biological activity:''' tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate (according to Swiss-Prot) 3'-5' exoribonuclease | ||
| − | * '''Protein family:''' RNase PH family (according to Swiss-Prot) | + | * '''Protein family:''' [[RNase]] PH family (according to Swiss-Prot) |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| Line 122: | Line 122: | ||
=References= | =References= | ||
| − | <pubmed>17576666 15805522, </pubmed> | + | <pubmed>17576666 15805522, 19880604 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:23, 3 November 2009
- Description: RNase PH
| Gene name | rph |
| Synonyms | |
| Essential | no |
| Product | RNase PH (EC 2.7.7.56) |
| Function | 3'-5' exoribonuclease |
| MW, pI | 26 kDa, 4.888 |
| Gene length, protein length | 735 bp, 245 aa |
| Immediate neighbours | ysnA, gerM |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU28370
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate (according to Swiss-Prot) 3'-5' exoribonuclease
- Protein family: RNase PH family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: 1OYS
- UniProt: P28619
- KEGG entry: [2]
- E.C. number: 2.7.7.56
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
David Bechhofer, Mount Sinai School, New York, USA Homepage
Ciaran Condon, IBPC, Paris, France Homepage
Your additional remarks
References
Yulia Redko, Ciarán Condon
Maturation of 23S rRNA in Bacillus subtilis in the absence of Mini-III.
J Bacteriol: 2010, 192(1);356-9
[PubMed:19880604]
[WorldCat.org]
[DOI]
(I p)
Shiyi Yao, Joshua B Blaustein, David H Bechhofer
Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site.
Nucleic Acids Res: 2007, 35(13);4464-73
[PubMed:17576666]
[WorldCat.org]
[DOI]
(I p)
Irina A Oussenko, Teppei Abe, Hiromi Ujiie, Akira Muto, David H Bechhofer
Participation of 3'-to-5' exoribonucleases in the turnover of Bacillus subtilis mRNA.
J Bacteriol: 2005, 187(8);2758-67
[PubMed:15805522]
[WorldCat.org]
[DOI]
(P p)
