Difference between revisions of "YtrF"

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* '''Description:''' acetoin ABC transporter  (substrate-binding lipoprotein) <br/><br/>
+
* '''Description:''' acetoin [[ABC transporter]] (substrate-binding lipoprotein) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || acetoin ABC transporter  (substrate-binding lipoprotein)  
+
|style="background:#ABCDEF;" align="center"| '''Product''' || acetoin [[ABC transporter]] (substrate-binding lipoprotein)  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of acetoin
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of acetoin
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=Expression and regulation=
 
=Expression and regulation=
 +
* '''Operon:''' ''[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249}}
  
* '''Operon:'''
+
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|10986249}}
 
 
* '''[[Sigma factor]]:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** expressed early in the stationary phase  {{PubMed|10986249}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[YtrA]]: transcription repression {{PubMed|10986249}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  

Revision as of 18:52, 27 November 2009

Gene name ytrF
Synonyms
Essential no
Product acetoin ABC transporter (substrate-binding lipoprotein)
Function uptake of acetoin
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 48 kDa, 8.292
Gene length, protein length 1308 bp, 436 aa
Immediate neighbours bceR, ytrE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrF context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU30410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-4 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early in the stationary phase PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)