Difference between revisions of "PatB"

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=Expression and regulation=
 
=Expression and regulation=
 
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* '''Operon:''' ''[[yugF]]'' {{PubMed|9274030}}
* '''Operon:'''  
 
  
 
* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190}}
 
* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190}}
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=References=
 
=References=
 
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<pubmed>9274030 15699190 15760717 </pubmed>
<pubmed>15760717,, 15760717 </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 20:46, 21 December 2009

  • Description: cystathione-beta-lyase

Gene name patB
Synonyms
Essential no
Product cystathione-beta-lyase
Function biosynthesis of methionine
Metabolic function and regulation of this protein in SubtiPathways:
Cys, Met & Sulfate assimilation
MW, pI 42 kDa, 5.439
Gene length, protein length 1161 bp, 387 aa
Immediate neighbours yugE, kinB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
PatB context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU31440

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: L-cystathionine + H2O = L-homocysteine + NH3 + pyruvate (according to Swiss-Prot)
  • Protein family: MalY/patB cystathionine beta-lyase subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

S Auger, M P Gomez, A Danchin, I Martin-Verstraete
The PatB protein of Bacillus subtilis is a C-S-lyase.
Biochimie: 2005, 87(2);231-8
[PubMed:15760717] [WorldCat.org] [DOI] (P p)

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Bauke Oudega, Gregory Koningstein, Luísa Rodrigues, Maria de Sales Ramon, Helmut Hilbert, Andreas Düsterhöft, Thomas M Pohl, Thomas Weitzenegger
Analysis of the Bacillus subtilis genome: cloning and nucleotide sequence of a 62 kb region between 275 degrees (rrnB) and 284 degrees (pai).
Microbiology (Reading): 1997, 143 ( Pt 8);2769-2774
[PubMed:9274030] [WorldCat.org] [DOI] (P p)