Difference between revisions of "ScoC"

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(Biological materials)
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|style="background:#ABCDEF;" align="center"|'''Function''' || transition state regulator
 
|style="background:#ABCDEF;" align="center"|'''Function''' || transition state regulator
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this gene in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation]'''
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.188   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.188   

Revision as of 10:03, 16 February 2010

  • Description: transcriptional repressor of genes expressed in the transition phase

Gene name scoC
Synonyms hpr, catA
Essential no
Product transcriptional repressor (MarR family)
Function transition state regulator
Regulation of this gene in SubtiPathways:
Biofilm formation
MW, pI 23 kDa, 5.188
Gene length, protein length 609 bp, 203 aa
Immediate neighbours yhaI, yhaH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Hpr context.gif
This image was kindly provided by SubtiList




The gene

Basic information

  • Locus tag: BSU09990

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes controlled by ScoC

repressed: aprE, bacA-bacB-bacC-bacD-bacE-bacF PubMed, hag, flgM,

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed upon transition into the stationary phase (AbrB) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References