Difference between revisions of "YtrF"

From SubtiWiki
Jump to: navigation, search
Line 85: Line 85:
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:''' ([[YtrB]]-[[YtrE]])-([[YtrC]]-[[YtrD]])-[[YtrF]] {{PubMed|10986249}}
+
* '''[[SubtInteract|Interactions]]:'''
 +
** ([[YtrB]]-[[YtrE]])-([[YtrC]]-[[YtrD]])-[[YtrF]] {{PubMed|10986249}}
  
* '''Localization:''' cell membrane (via [[YtrC]]-[[YtrD]]) {{PubMed|10986249}}
+
* '''[[Localization]]:''' cell membrane (via [[YtrC]]-[[YtrD]]) {{PubMed|10986249}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 102: Line 103:
  
 
=Expression and regulation=
 
=Expression and regulation=
* '''Operon:''' ''[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249}}  
+
* '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249,21856850}}  
  
 
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|10986249}}  
 
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|10986249}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced by ramoplanin ([[YtrA]]) {{PubMed|21856850}}
 
** expressed early in the stationary phase  {{PubMed|10986249}}  
 
** expressed early in the stationary phase  {{PubMed|10986249}}  
 
** induced by cold shock (7.5-fold) {{PubMed|12399512}}
 
** induced by cold shock (7.5-fold) {{PubMed|12399512}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
** [[YtrA]]: transcription repression {{PubMed|10986249}}  
+
** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}}  
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
Line 134: Line 136:
  
 
=References=
 
=References=
 
+
'''Additional publications:''' {{PubMed|21856850}}
 
<pubmed>10986249,10092453, 12399512</pubmed>
 
<pubmed>10986249,10092453, 12399512</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 15:21, 24 August 2011

Gene name ytrF
Synonyms
Essential no
Product acetoin ABC transporter (substrate-binding lipoprotein)
Function uptake of acetoin
Interactions involving this protein in SubtInteract: YtrF
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 48 kDa, 8.292
Gene length, protein length 1308 bp, 436 aa
Immediate neighbours bceR, ytrE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrF context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

ABC transporters, utilization of specific carbon sources, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-4 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (7.5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)