Difference between revisions of "YtrF"

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* '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249,21856850}}  
 
* '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249,21856850}}  
  
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|10986249}}  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytrF_3113979_3115289_-1 ytrF] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:''' [[SigA]]  {{PubMed|10986249}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}}  
 
** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}}  
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 15:48, 16 April 2012

Gene name ytrF
Synonyms
Essential no
Product ABC transporter (substrate-binding lipoprotein)
Function unknown
Interactions involving this protein in SubtInteract: YtrF
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 48 kDa, 8.292
Gene length, protein length 1308 bp, 436 aa
Immediate neighbours bceR, ytrE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrF context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-4 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (7.5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)