Difference between revisions of "YhcR"

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* '''Description:''' extracellular non-specific endonuclease, Rnase <br/><br/>
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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleic acids
 
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleic acids
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU09190 yhcR]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhcR YhcR]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhcR YhcR]

Revision as of 16:13, 6 August 2012


Gene name yhcR
Synonyms
Essential no
Product extracellular non-specific endonuclease, Rnase
Function utilization of nucleic acids
Gene expression levels in SubtiExpress: yhcR
Interactions involving this protein in SubtInteract: YhcR
MW, pI 132 kDa, 4.693
Gene length, protein length 3651 bp, 1217 aa
Immediate neighbours yhcQ, yhcS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YhcR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhcR expression.png
























Categories containing this gene/protein

biosynthesis/ acquisition of nucleotides, Rnases

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU09190

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): YfkN

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

David Bechhofer, Mount Sinai School, New York, USA Homepage

Your additional remarks

References

Additional referencecs: PubMed

Hamidreza Fasehee, Helga Westers, Albert Bolhuis, Haike Antelmann, Michael Hecker, Wim J Quax, Agha F Mirlohi, Jan Maareten van Dijl, Gholamreza Ahmadian
Functional analysis of the sortase YhcS in Bacillus subtilis.
Proteomics: 2011, 11(19);3905-13
[PubMed:21800427] [WorldCat.org] [DOI] (I p)

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)

Irina A Oussenko, Roberto Sanchez, David H Bechhofer
Bacillus subtilis YhcR, a high-molecular-weight, nonspecific endonuclease with a unique domain structure.
J Bacteriol: 2004, 186(16);5376-83
[PubMed:15292138] [WorldCat.org] [DOI] (P p)