Difference between revisions of "YdgF"

From SubtiWiki
Jump to: navigation, search
Line 34: Line 34:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 69: Line 65:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' amino acid-polyamine-organocation (APC) superfamily (according to Swiss-Prot)
+
* '''Protein family:''' secondary amino acid transporter
  
* '''Paralogous protein(s):''' [[AapA]], [[YtnA]], [[YbxG]]
+
* '''Paralogous protein(s):''' [[AapA]], [[GabP]], [[HutM]], [[RocC]], [[RocE]], [[YbgF]], [[YbxG]], [[YtnA]], [[YvbW]]
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===

Revision as of 09:50, 13 November 2012

  • Description: similar to amino acid permease

Gene name ydgF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydgF
MW, pI 50 kDa, 9.337
Gene length, protein length 1374 bp, 458 aa
Immediate neighbours vmlR, dinB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdgF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdgF expression.png















Categories containing this gene/protein

transporters/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU05620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: secondary amino acid transporter

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)