Difference between revisions of "PghL"

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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:''' cell membrane (according to Swiss-Prot)
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* '''[[Localization]]:'''
 +
** cell membrane (according to Swiss-Prot)
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yndL_1915221_1915979_1 yndL] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yndL_1915221_1915979_1 yndL] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,16385044}}
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* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,16385044}}
  
 
* '''Regulation:''' expressed during sporulation in the mother cell[http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]
 
* '''Regulation:''' expressed during sporulation in the mother cell[http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed]

Revision as of 19:45, 15 December 2012

  • Description: sporulation protein

Gene name yndL
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yndL
MW, pI 28 kDa, 6.92
Gene length, protein length 756 bp, 252 aa
Immediate neighbours surA, yndM
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YndL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YndL expression.png















Categories containing this gene/protein

sporulation proteins, membrane proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU17820

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0714 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed during sporulation in the mother cellPubMed
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Jessica M Silvaggi, John B Perkins, Richard Losick
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.
J Bacteriol: 2006, 188(2);532-41
[PubMed:16385044] [WorldCat.org] [DOI] (P p)