Difference between revisions of "YabM"

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|style="background:#ABCDEF;" align="center"|'''Function''' || alternate pathway for peptidoglycan strand synthesis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || alternate pathway for peptidoglycan strand synthesis
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU00570 yabM]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00570 yabM]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 57 kDa, 9.623   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 57 kDa, 9.623   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spoVT]]'', ''[[yabN]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spoVT]]'', ''[[yabN]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11833&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00570 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00570 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00570 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yabM_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabM_context.gif]]

Revision as of 11:55, 13 May 2013

  • Description: may function in a previously observed alternate pathway for peptidoglycan strand synthesis

Gene name yabM
Synonyms
Essential no
Product unknown
Function alternate pathway for peptidoglycan strand synthesis
Gene expression levels in SubtiExpress: yabM
MW, pI 57 kDa, 9.623
Gene length, protein length 1596 bp, 532 aa
Immediate neighbours spoVT, yabN
Sequences Protein DNA Advanced_DNA
Genetic context
YabM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YabM expression.png
























Categories containing this gene/protein

cell wall synthesis, biosynthesis of cell wall components, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00570

Phenotypes of a mutant

Mutants lacking YabM exhibit sensitivity to moenomycin, an antibiotic that blocks peptidoglycan polymerization by class A penicillin-binding proteins. PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: may function in a previously observed alternate pathway for peptidoglycan strand synthesis PubMed
  • Protein family: polysaccharide synthase family (according to Swiss-Prot)

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References