Difference between revisions of "SecE"

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|style="background:#ABCDEF;" align="center"|'''Function''' || [[protein secretion]]  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[protein secretion]]  
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU01000 secE]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01000 secE]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SecE SecE]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SecE SecE]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rpmGB]]'', ''[[nusG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rpmGB]]'', ''[[nusG]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11876&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01000 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01000 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01000 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:secE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:secE_context.gif]]

Revision as of 11:57, 13 May 2013

  • Description: preprotein translocase subunit

Gene name secE
Synonyms
Essential yes PubMed
Product preprotein translocase subunit
Function protein secretion
Gene expression levels in SubtiExpress: secE
Interactions involving this protein in SubtInteract: SecE
Metabolic function and regulation of this protein in SubtiPathways:
Protein secretion
MW, pI 6 kDa, 10.47
Gene length, protein length 177 bp, 59 aa
Immediate neighbours rpmGB, nusG
Sequences Protein DNA Advanced_DNA
Genetic context
SecE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SecE expression.png
























Categories containing this gene/protein

protein secretion, essential genes, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU01000

Phenotypes of a mutant

essential PubMed PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: secE/SEC61-gamma family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: transmembrane protein with a single TM domain
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

B. subtilis secE complements the secretion phenotype of a cold sensitive E. coli secE mutant.

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jochen Zimmer, Yunsun Nam, Tom A Rapoport
Structure of a complex of the ATPase SecA and the protein-translocation channel.
Nature: 2008, 455(7215);936-43
[PubMed:18923516] [WorldCat.org] [DOI] (I p)

S M Jeong, H Yoshikawa, H Takahashi
Isolation and characterization of the secE homologue gene of Bacillus subtilis.
Mol Microbiol: 1993, 10(1);133-42
[PubMed:7968510] [WorldCat.org] [DOI] (P p)