Difference between revisions of "YkgB"
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|style="background:#ABCDEF;" align="center"|'''Function''' || pentose phosphate pathway | |style="background:#ABCDEF;" align="center"|'''Function''' || pentose phosphate pathway | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13010 ykgB] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 5.154 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 5.154 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykfD]]'', ''[[ykgA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykfD]]'', ''[[ykgA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13010 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ykgB_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ykgB_context.gif]] | ||
Revision as of 12:37, 13 May 2013
- Description: 6-phosphogluconolactonase, general stress protein
| Gene name | ykgB |
| Synonyms | |
| Essential | no |
| Product | 6-phosphogluconolactonase |
| Function | pentose phosphate pathway |
| Gene expression levels in SubtiExpress: ykgB | |
| MW, pI | 38 kDa, 5.154 |
| Gene length, protein length | 1047 bp, 349 aa |
| Immediate neighbours | ykfD, ykgA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), carbon core metabolism
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU13010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- 6-phosphogluconolactone --> 6-phosphogluconate (pentose phosphate pathway) PubMed
- Protein family: cycloisomerase 2 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34499
- KEGG entry: [3]
- E.C. number: 3.1.1.31
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Germán Plata, Tobias Fuhrer, Tzu-Lin Hsiao, Uwe Sauer, Dennis Vitkup
Global probabilistic annotation of metabolic networks enables enzyme discovery.
Nat Chem Biol: 2012, 8(10);848-54
[PubMed:22960854]
[WorldCat.org]
[DOI]
(I p)
Lynn C Thomason, Donald L Court, Atin R Datta, Rita Khanna, Judah L Rosner
Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase.
J Bacteriol: 2004, 186(24);8248-53
[PubMed:15576773]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513]
[WorldCat.org]
[DOI]
(P p)
