Difference between revisions of "RnmV"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabE]]'', ''[[ksgA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabE]]'', ''[[ksgA]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00410 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00410 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rnmV_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rnmV_context.gif]]

Revision as of 09:09, 14 May 2013

Gene name rnmV
Synonyms yabF
Essential no
Product endoribonuclease M5
Function 5S ribosomal RNA maturation
Gene expression levels in SubtiExpress: rnmV
MW, pI 20 kDa, 6.681
Gene length, protein length 558 bp, 186 aa
Immediate neighbours yabE, ksgA
Sequences Protein DNA DNA_with_flanks
Genetic context
RnmV context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RnmV expression.png
























Categories containing this gene/protein

Rnases, translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: N-terminal part: Toprim domain PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Ciaran Condon, IBPC, Paris, France Homepage

Your additional remarks

References

Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537] [WorldCat.org] [DOI] (P p)

Frédéric Allemand, Nathalie Mathy, Dominique Brechemier-Baey, Ciarán Condon
The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member.
Nucleic Acids Res: 2005, 33(13);4368-76
[PubMed:16077031] [WorldCat.org] [DOI] (I e)

Ciarán Condon, Jordi Rourera, Dominique Brechemier-Baey, Harald Putzer
Ribonuclease M5 has few, if any, mRNA substrates in Bacillus subtilis.
J Bacteriol: 2002, 184(10);2845-9
[PubMed:11976317] [WorldCat.org] [DOI] (P p)

C Condon, D Brechemier-Baey, B Beltchev, M Grunberg-Manago, H Putzer
Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function.
RNA: 2001, 7(2);242-53
[PubMed:11233981] [WorldCat.org] [DOI] (P p)