Difference between revisions of "FadR"

From SubtiWiki
Jump to: navigation, search
Line 24: Line 24:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fadB]]'', ''[[lcfA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fadB]]'', ''[[lcfA]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28550 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28550 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ysiA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ysiA_context.gif]]

Revision as of 10:56, 14 May 2013

  • Description: transcriptional repressor (TetR family), regulation of fatty acid degradation

Gene name fadR
Synonyms ysiA
Essential no
Product transcriptional repressor
Function regulation of fatty acid degradation
Gene expression levels in SubtiExpress: fadR
Metabolic function and regulation of this protein in SubtiPathways:
Fatty acid degradation
MW, pI 21 kDa, 6.118
Gene length, protein length 582 bp, 194 aa
Immediate neighbours fadB, lcfA
Sequences Protein DNA DNA_with_flanks
Genetic context
YsiA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
FadR expression.png




























Categories containing this gene/protein

utilization of lipids, transcription factors and their control

This gene is a member of the following regulons

CcpA regulon, FadR regulon

The FadR regulon

The gene

Basic information

  • Locus tag: BSU28550

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: long chain fatty acids act as inducers that release FadR from its operator sites

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Yasutaro Fujita, Hiroshi Matsuoka, Kazutake Hirooka
Regulation of fatty acid metabolism in bacteria.
Mol Microbiol: 2007, 66(4);829-39
[PubMed:17919287] [WorldCat.org] [DOI] (P p)

Original publications

Additional publications: PubMed