Difference between revisions of "YvcJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvcK]]'', ''[[yvcI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvcK]]'', ''[[yvcI]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34770 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34770 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yvcJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvcJ_context.gif]]

Revision as of 11:21, 14 May 2013

  • Description: GTPase, nucleotide-binding protein

Gene name yvcJ
Synonyms
Essential no
Product GTPase
Function required for the expression of late competence genes
Gene expression levels in SubtiExpress: yvcJ
MW, pI 33 kDa, 6.702
Gene length, protein length 885 bp, 295 aa
Immediate neighbours yvcK, yvcI
Sequences Protein DNA DNA_with_flanks
Genetic context
YvcJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvcJ expression.png
























Categories containing this gene/protein

genetic competence

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU34770

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: binds and hydrolyzes nucleotides, required for the expression of late competence genes (comK, comS) PubMed
  • Protein family: UPF0042 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:
    • can be localized in the cell either as a helical-like pattern or as foci close to the poles and the septa depending on growth phase and on growth medium PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: very weak stimuation of expression by citrate and succinate PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector: pGP735 (N-terminal Strep-tag, purification from B. subtilis, for SPINE, in pGP380), available in Stülke lab
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Görke lab
  • Antibody:

Labs working on this gene/protein

Anne Galinier, University of Marseille, France

Your additional remarks

References

Original publications

Frédérique Pompeo, Jennifer Luciano, Céline Brochier-Armanet, Anne Galinier
The GTPase function of YvcJ and its subcellular relocalization are dependent on growth conditions in Bacillus subtilis.
J Mol Microbiol Biotechnol: 2011, 20(3);156-67
[PubMed:21709426] [WorldCat.org] [DOI] (I p)

Jennifer Luciano, Elodie Foulquier, Jean-Raphael Fantino, Anne Galinier, Frédérique Pompeo
Characterization of YvcJ, a conserved P-loop-containing protein, and its implication in competence in Bacillus subtilis.
J Bacteriol: 2009, 191(5);1556-64
[PubMed:19074378] [WorldCat.org] [DOI] (I p)

Boris Görke, Elodie Foulquier, Anne Galinier
YvcK of Bacillus subtilis is required for a normal cell shape and for growth on Krebs cycle intermediates and substrates of the pentose phosphate pathway.
Microbiology (Reading): 2005, 151(Pt 11);3777-3791
[PubMed:16272399] [WorldCat.org] [DOI] (P p)

A Galinier, J Haiech, M C Kilhoffer, M Jaquinod, J Stülke, J Deutscher, I Martin-Verstraete
The Bacillus subtilis crh gene encodes a HPr-like protein involved in carbon catabolite repression.
Proc Natl Acad Sci U S A: 1997, 94(16);8439-44
[PubMed:9237995] [WorldCat.org] [DOI] (P p)

Publications on the E. coli homolog

Falk Kalamorz, Birte Reichenbach, Walter März, Bodo Rak, Boris Görke
Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli.
Mol Microbiol: 2007, 65(6);1518-33
[PubMed:17824929] [WorldCat.org] [DOI] (P p)