Difference between revisions of "BsrB"

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(Biological materials)
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* '''lacZ fusion:'''
 
* '''lacZ fusion:'''
 
  
 
=Labs working on this gene/RNA=
 
=Labs working on this gene/RNA=

Revision as of 14:07, 14 June 2013

  • Description: 6S RNA

Gene name bsrB
Synonyms
Essential no
Product 6S RNA
Function antagonist of SigA
Interactions involving this RNA in SubtInteract: BsrB
Gene length 203 bp
Immediate neighbours yocI, azoR1
Gene sequence (+200bp)
Genetic context
BsrB context.gif








Categories containing this gene/protein

sigma factors and their control, ncRNA

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU_misc_RNA_32

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: no entry
  • Structure:

Additional information

Expression and regulation

  • Regulation: expressed during vegetative growthPubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:

Labs working on this gene/RNA

  • Kouji Nakamura, Tsukuba, University, Japan
  • Roland Hartmann, Philipps-Universität Marburg, Marburg, Germany, homepage

Your additional remarks

References

Ignacio J Cabrera-Ostertag, Amy T Cavanagh, Karen M Wassarman
Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli.
Nucleic Acids Res: 2013, 41(15);7501-11
[PubMed:23761441] [WorldCat.org] [DOI] (I p)

Amy T Cavanagh, Karen M Wassarman
6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis.
J Bacteriol: 2013, 195(9);2079-86
[PubMed:23457253] [WorldCat.org] [DOI] (I p)

Benedikt M Beckmann, Philipp G Hoch, Manja Marz, Dagmar K Willkomm, Margarita Salas, Roland K Hartmann
A pRNA-induced structural rearrangement triggers 6S-1 RNA release from RNA polymerase in Bacillus subtilis.
EMBO J: 2012, 31(7);1727-38
[PubMed:22333917] [WorldCat.org] [DOI] (I p)

Amy T Cavanagh, Jamie M Sperger, Karen M Wassarman
Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis.
Nucleic Acids Res: 2012, 40(5);2234-46
[PubMed:22102588] [WorldCat.org] [DOI] (I p)

Benedikt M Beckmann, Olga Y Burenina, Philipp G Hoch, Elena A Kubareva, Cynthia M Sharma, Roland K Hartmann
In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis.
RNA Biol: 2011, 8(5);839-49
[PubMed:21881410] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Narasimhan Sudarsan, Zasha Weinberg, Walter L Ruzzo, Ronald R Breaker
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.
RNA: 2005, 11(5);774-84
[PubMed:15811922] [WorldCat.org] [DOI] (P p)

Yoshinari Ando, Sayaka Asari, Satoru Suzuma, Kunio Yamane, Kouji Nakamura
Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genome.
FEMS Microbiol Lett: 2002, 207(1);29-33
[PubMed:11886746] [WorldCat.org] [DOI] (P p)