Difference between revisions of "YydA"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 477 bp, 159 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 477 bp, 159 aa  
 
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|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yydB]]'', ''[[yycS]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yydB]]'', ''[[yyzF]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16060&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16060&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

Revision as of 13:31, 5 December 2012

  • Description: similar to pseudouridine methyltransferase

Gene name yydA
Synonyms
Essential no
Product similar to pseudouridine methyltransferase
Function may be involved in maturation of 23S rRNA
Gene expression levels in SubtiExpress: yydA
MW, pI 17 kDa, 9.314
Gene length, protein length 477 bp, 159 aa
Immediate neighbours yydB, yyzF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YydA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YydA expression.png
























Categories containing this gene/protein

translation

This gene is a member of the following regulons

DnaA regulon

The gene

Basic information

  • Locus tag: BSU40230

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine (according to Swiss-Prot)
  • Protein family: RNA methyltransferase rlmH family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed