Difference between revisions of "RpmJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[infA]]'', ''[[rpsM]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[infA]]'', ''[[rpsM]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01400 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01400 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rpmJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rpmJ_context.gif]]

Revision as of 09:17, 14 May 2013

Gene name rpmJ
Synonyms rpmX
Essential no PubMed
Product ribosomal protein L36 (ribosomal protein B)
Function translation
Gene expression levels in SubtiExpress: rpmJ
Interactions involving this protein in SubtInteract: RpmJ
MW, pI 4 kDa, 10.82
Gene length, protein length 111 bp, 37 aa
Immediate neighbours infA, rpsM
Sequences Protein DNA DNA_with_flanks
Genetic context
RpmJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpmJ expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01400

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Matthew A Lauber, William E Running, James P Reilly
B. subtilis ribosomal proteins: structural homology and post-translational modifications.
J Proteome Res: 2009, 8(9);4193-206
[PubMed:19653700] [WorldCat.org] [DOI] (P p)

J W Suh, S A Boylan, S H Oh, C W Price
Genetic and transcriptional organization of the Bacillus subtilis spc-alpha region.
Gene: 1996, 169(1);17-23
[PubMed:8635744] [WorldCat.org] [DOI] (P p)