YokL

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  • Description: similar to phage-related protein

Gene name yokL
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yokL
MW, pI 20 kDa, 4.782
Gene length, protein length 531 bp, 177 aa
Immediate neighbours SR4, yokK
Sequences Protein DNA DNA_with_flanks
Genetic context
YokL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YokL expression.png















Categories containing this gene/protein

SP-beta prophage

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU21550

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: sleB family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • A ncRNA is predicted between yolA and yokL PubMed
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 61 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)