DefB

From SubtiWiki
Revision as of 10:35, 3 June 2009 by Sroppel (talk | contribs)
Jump to: navigation, search
  • Description: major formylmethionine deformylase

Gene name ykrB
Synonyms defB
Essential no
Product formylmethionine deformylase
Function translation
MW, pI 20 kDa, 5.456
Gene length, protein length 552 bp, 184 aa
Immediate neighbours ykrA, ykyA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YkrB context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU14560

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Formyl-L-methionyl peptide + H2O = formate + methionyl peptide (according to Swiss-Prot)
  • Protein family: polypeptide deformylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1LQY (complex with antibiotic actinonin, Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed