Difference between revisions of "Sandbox"

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* '''Description:''' [[16S rRNA]]<br/><br/>
+
* '''Description:''' tRNA-Ile
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rrnO-16S''
+
|''trnO-Ile''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-16S
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Ile
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 1553 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 77 bp
 
|-|-
 
|-|-
 
    
 
    
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gyrA]]'', ''[[trnO-Ile]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnO-16S]]'', ''[[trnO-Ala]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-16S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnO-Ile_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-16S_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnO-Ile_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 49: Line 49:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00005]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00006]
  
 
* '''Structure:'''
 
* '''Structure:'''
Line 64: Line 64:
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** passive transcriptional regulation by cellular GTP concentration
 
** downregulated by stringent response upon amino acid starvation {{PubMed|21097612}}
 
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 90: Line 88:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|21097612,21303765}}
+
 
<pubmed> 6312418, 19447912 15496987 20634236 </pubmed>  
+
<pubmed>6312418, </pubmed>
[[Category:Ribosomal RNA]]
+
 
 +
[[Category:Transfer RNA]]

Revision as of 14:54, 11 November 2013

  • Description: tRNA-Ile
Gene name trnO-Ile
Synonyms
Essential no
Product transfer RNA-Ile
Function translation
Gene length 77 bp
Immediate neighbours rrnO-16S, trnO-Ala
Gene sequence (+200bp)
Genetic context
TrnO-Ile context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

N Ogasawara, S Moriya, H Yoshikawa
Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.
Nucleic Acids Res: 1983, 11(18);6301-18
[PubMed:6312418] [WorldCat.org] [DOI] (P p)