Difference between revisions of "Skin element"

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(Important note)
 
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* 5.1.2. [[SPß prophage]]
 
* 5.1.2. [[SPß prophage]]
 
* 5.1.3. [[Skin element]]
 
* 5.1.3. [[Skin element]]
* 5.1.4. [[Phage-related functions]]
+
* 5.1.4. [[Prophage 1]]
 +
* 5.1.5. [[Prophage 3]]
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* 5.1.6. [[Phage-related functions]]
 
|Related=
 
|Related=
none
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* [[SknR regulon]]
 
|}}
 
|}}
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 +
== Important note==
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* In 168, the Skin element disrupts the ''[[sigK]]'' gene
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* A strain devoid of the [[Skin element]] (1A884) is available at the [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A884&Search=1A884 BGSC], {{PubMed|9537360}}
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* A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}}
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* deletion of the skin element results in an increased rate of spontaneous [[germination]] due to lower expression of [[GerE]] {{PubMed|26279233}}
  
 
== Genes in this functional category ==
 
== Genes in this functional category ==
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* ''[[arsC]]''
 
* ''[[arsC]]''
 
* ''[[arsR]]''
 
* ''[[arsR]]''
 +
* ''[[as-bsrH]]''
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*'' [[bsrH]]''
 
* ''[[cwlA]]''
 
* ''[[cwlA]]''
 
* ''[[phrE]]''
 
* ''[[phrE]]''
 
* ''[[rapE]]''
 
* ''[[rapE]]''
 +
* ''[[ratA]]''
 
* ''[[sknR]]''
 
* ''[[sknR]]''
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* ''[[spoIVCA]]''
 
* ''[[txpA]]''
 
* ''[[txpA]]''
 
* ''[[yqaB]]''
 
* ''[[yqaB]]''
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* ''[[yqzN]]''
 
* ''[[yqzN]]''
 
* ''[[yqzO]]''
 
* ''[[yqzO]]''
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==Key publications==
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<pubmed> 20889742 9537360 8969508 8760915 7704261 12949151 </pubmed>
 
=Back to [[categories]]=
 
=Back to [[categories]]=

Latest revision as of 15:19, 19 August 2015

Parent categories
Neighbouring categories
Related categories

Important note

Genes in this functional category

Key publications

Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742] [WorldCat.org] [DOI] (I p)

Helga Westers, Ronald Dorenbos, Jan Maarten van Dijl, Jorrit Kabel, Tony Flanagan, Kevin M Devine, Florence Jude, Simone J Seror, Aaron C Beekman, Elise Darmon, Caroline Eschevins, Anne de Jong, Sierd Bron, Oscar P Kuipers, Alessandra M Albertini, Haike Antelmann, Michael Hecker, Nicola Zamboni, Uwe Sauer, Claude Bruand, Dusko S Ehrlich, Juan C Alonso, Margarita Salas, Wim J Quax
Genome engineering reveals large dispensable regions in Bacillus subtilis.
Mol Biol Evol: 2003, 20(12);2076-90
[PubMed:12949151] [WorldCat.org] [DOI] (P p)

T Sato, Y Kobayashi
The ars operon in the skin element of Bacillus subtilis confers resistance to arsenate and arsenite.
J Bacteriol: 1998, 180(7);1655-61
[PubMed:9537360] [WorldCat.org] [DOI] (P p)

M Mizuno, S Masuda, K Takemaru, S Hosono, T Sato, M Takeuchi, Y Kobayashi
Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the Bacillus subtilis genome containing the skin element and many sporulation genes.
Microbiology (Reading): 1996, 142 ( Pt 11);3103-11
[PubMed:8969508] [WorldCat.org] [DOI] (P p)

S Krogh, M O'Reilly, N Nolan, K M Devine
The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous.
Microbiology (Reading): 1996, 142 ( Pt 8);2031-40
[PubMed:8760915] [WorldCat.org] [DOI] (P p)

K Takemaru, M Mizuno, T Sato, M Takeuchi, Y Kobayashi
Complete nucleotide sequence of a skin element excised by DNA rearrangement during sporulation in Bacillus subtilis.
Microbiology (Reading): 1995, 141 ( Pt 2);323-7
[PubMed:7704261] [WorldCat.org] [DOI] (P p)

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