Stusti 2018

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

Riboregulation and virulence, targeting by antibiotics: Theresia Eisele

Juan J Quereda, Pascale Cossart
Regulating Bacterial Virulence with RNA.
Annu Rev Microbiol: 2017, 71;263-280
[PubMed:28886688] [WorldCat.org] [DOI] (I p)

Petra Dersch, Muna A Khan, Sabrina Mühlen, Boris Görke
Roles of Regulatory RNAs for Antibiotic Resistance in Bacteria and Their Potential Value as Novel Drug Targets.
Front Microbiol: 2017, 8;803
[PubMed:28529506] [WorldCat.org] [DOI] (P e)

Hao Wang, Paul A Mann, Li Xiao, Charles Gill, Andrew M Galgoci, John A Howe, Artjohn Villafania, Christopher M Barbieri, Juliana C Malinverni, Xinwei Sher, Todd Mayhood, Megan D McCurry, Nicholas Murgolo, Amy Flattery, Matthias Mack, Terry Roemer
Dual-Targeting Small-Molecule Inhibitors of the Staphylococcus aureus FMN Riboswitch Disrupt Riboflavin Homeostasis in an Infectious Setting.
Cell Chem Biol: 2017, 24(5);576-588.e6
[PubMed:28434876] [WorldCat.org] [DOI] (I p)

Andreas Matern, Danielle Pedrolli, Stephanie Großhennig, Jörgen Johansson, Matthias Mack
Uptake and Metabolism of Antibiotics Roseoflavin and 8-Demethyl-8-Aminoriboflavin in Riboflavin-Auxotrophic Listeria monocytogenes.
J Bacteriol: 2016, 198(23);3233-3243
[PubMed:27672192] [WorldCat.org] [DOI] (I e)

Aaron M Nuss, Ann Kathrin Heroven, Petra Dersch
RNA Regulators: Formidable Modulators of Yersinia Virulence.
Trends Microbiol: 2017, 25(1);19-34
[PubMed:27651123] [WorldCat.org] [DOI] (I p)

Daniel Dar, Maya Shamir, J R Mellin, Mikael Koutero, Noam Stern-Ginossar, Pascale Cossart, Rotem Sorek
Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria.
Science: 2016, 352(6282);aad9822
[PubMed:27120414] [WorldCat.org] [DOI] (I p)

John A Howe, Hao Wang, Thierry O Fischmann, Carl J Balibar, Li Xiao, Andrew M Galgoci, Juliana C Malinverni, Todd Mayhood, Artjohn Villafania, Ali Nahvi, Nicholas Murgolo, Christopher M Barbieri, Paul A Mann, Donna Carr, Ellen Xia, Paul Zuck, Dan Riley, Ronald E Painter, Scott S Walker, Brad Sherborne, Reynalda de Jesus, Weidong Pan, Michael A Plotkin, Jin Wu, Diane Rindgen, John Cummings, Charles G Garlisi, Rumin Zhang, Payal R Sheth, Charles J Gill, Haifeng Tang, Terry Roemer
Selective small-molecule inhibition of an RNA structural element.
Nature: 2015, 526(7575);672-7
[PubMed:26416753] [WorldCat.org] [DOI] (I p)

RNA modification: Jan Michel Göring

Baixing Wu, Li Li, Ying Huang, Jinbiao Ma, Jinrong Min
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Curr Opin Struct Biol: 2017, 47;67-76
[PubMed:28624569] [WorldCat.org] [DOI] (I p)

Hiroyuki Hori
Transfer RNA methyltransferases with a SpoU-TrmD  (SPOUT) fold and their modified nucleosides in  tRNA.
Biomolecules: 2017, 7(1);
[PubMed:28264529] [WorldCat.org] [DOI] (I e)

Ajay K Rana, Serge Ankri
Reviving the RNA World: An Insight into the Appearance of RNA Methyltransferases.
Front Genet: 2016, 7;99
[PubMed:27375676] [WorldCat.org] [DOI] (P e)

Marcus Fislage, Lina Wauters, Wim Versées
Invited review: MnmE, a GTPase that drives a complex tRNA modification reaction.
Biopolymers: 2016, 105(8);568-79
[PubMed:26832457] [WorldCat.org] [DOI] (I p)

Clément Dégut, Luc Ponchon, Marcia Folly-Klan, Pierre Barraud, Carine Tisné
The m1A(58) modification in eubacterial tRNA: An overview of tRNA recognition and mechanism of catalysis by TrmI.
Biophys Chem: 2016, 210;27-34
[PubMed:26189113] [WorldCat.org] [DOI] (I p)

RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel

R Alex Wu, Heather E Upton, Jacob M Vogan, Kathleen Collins
Telomerase Mechanism of Telomere Synthesis.
Annu Rev Biochem: 2017, 86;439-460
[PubMed:28141967] [WorldCat.org] [DOI] (I p)

Yoshiko Maida, Mami Yasukawa, Kenkichi Masutomi
De Novo RNA Synthesis by RNA-Dependent RNA Polymerase Activity of Telomerase Reverse Transcriptase.
Mol Cell Biol: 2016, 36(8);1248-59
[PubMed:26830230] [WorldCat.org] [DOI] (I e)

George Tzertzinis, Stanley Tabor, Nicole M Nichols
RNA-dependent DNA polymerases.
Curr Protoc Mol Biol: 2008, Chapter 3;Unit3.7
[PubMed:18972389] [WorldCat.org] [DOI] (I p)

CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier

Yoshizumi Ishino, Mart Krupovic, Patrick Forterre
History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology.
J Bacteriol: 2018, 200(7);
[PubMed:29358495] [WorldCat.org] [DOI] (I e)

Lina M Leon, Senén D Mendoza, Joseph Bondy-Denomy
How bacteria control the CRISPR-Cas arsenal.
Curr Opin Microbiol: 2018, 42;87-95
[PubMed:29169146] [WorldCat.org] [DOI] (I p)

Fuguo Jiang, Jennifer A Doudna
CRISPR-Cas9 Structures and Mechanisms.
Annu Rev Biophys: 2017, 46;505-529
[PubMed:28375731] [WorldCat.org] [DOI] (I p)

CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton

Addison V Wright, James K Nuñez, Jennifer A Doudna
Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering.
Cell: 2016, 164(1-2);29-44
[PubMed:26771484] [WorldCat.org] [DOI] (I p)

Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol

Tessa E F Quax, Nico J Claassens, Dieter Söll, John van der Oost
Codon Bias as a Means to Fine-Tune Gene Expression.
Mol Cell: 2015, 59(2);149-61
[PubMed:26186290] [WorldCat.org] [DOI] (I p)

Sibah Alkatib, Lars B Scharff, Marcelo Rogalski, Tobias T Fleischmann, Annemarie Matthes, Stefanie Seeger, Mark A Schöttler, Stephanie Ruf, Ralph Bock
The contributions of wobbling and superwobbling to the reading of the genetic code.
PLoS Genet: 2012, 8(11);e1003076
[PubMed:23166520] [WorldCat.org] [DOI] (I p)

Tamir Tuller
Codon bias, tRNA pools and horizontal gene transfer.
Mob Genet Elements: 2011, 1(1);75-77
[PubMed:22016848] [WorldCat.org] [DOI] (P p)

Richard Giegé, Frank Jühling, Joern Pütz, Peter Stadler, Claude Sauter, Catherine Florentz
Structure of transfer RNAs: similarity and variability.
Wiley Interdiscip Rev RNA: 2012, 3(1);37-61
[PubMed:21957054] [WorldCat.org] [DOI] (I p)

Ingo Wohlgemuth, Corinna Pohl, Joerg Mittelstaet, Andrey L Konevega, Marina V Rodnina
Evolutionary optimization of speed and accuracy of decoding on the ribosome.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2979-86
[PubMed:21930591] [WorldCat.org] [DOI] (I p)

Riboswitches: Jörg Stülke

Stefan Schwenk, Alexandra Moores, Irene Nobeli, Timothy D McHugh, Kristine B Arnvig
Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis.
Nucleic Acids Res: 2018, 46(11);5837-5849
[PubMed:29618088] [WorldCat.org] [DOI] (I p)

Laurène Bastet, Pierre Turcotte, Joseph T Wade, Daniel A Lafontaine
Maestro of regulation: Riboswitches orchestrate gene expression at the levels of translation, transcription and mRNA decay.
RNA Biol: 2018, 15(6);679-682
[PubMed:29537923] [WorldCat.org] [DOI] (I p)

Marc Vogel, Julia E Weigand, Britta Kluge, Manuel Grez, Beatrix Suess
A small, portable RNA device for the control of exon skipping in mammalian cells.
Nucleic Acids Res: 2018, 46(8);e48
[PubMed:29420816] [WorldCat.org] [DOI] (I p)

Etienne B Greenlee, Shira Stav, Ruben M Atilho, Kenneth I Brewer, Kimberly A Harris, Sarah N Malkowski, Gayan Mirihana Arachchilage, Kevin R Perkins, Madeline E Sherlock, Ronald R Breaker
Challenges of ligand identification for the second wave of orphan riboswitch candidates.
RNA Biol: 2018, 15(3);377-390
[PubMed:29135333] [WorldCat.org] [DOI] (I p)

James W Nelson, Ronald R Breaker
The lost language of the RNA World.
Sci Signal: 2017, 10(483);
[PubMed:28611182] [WorldCat.org] [DOI] (I e)

Hannah Steinert, Florian Sochor, Anna Wacker, Janina Buck, Christina Helmling, Fabian Hiller, Sara Keyhani, Jonas Noeske, Steffen Grimm, Martin M Rudolph, Heiko Keller, Rachel Anne Mooney, Robert Landick, Beatrix Suess, Boris Fürtig, Jens Wöhnert, Harald Schwalbe
Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.
Elife: 2017, 6;
[PubMed:28541183] [WorldCat.org] [DOI] (I e)

Joseph E Wedekind, Debapratim Dutta, Ivan A Belashov, Jermaine L Jenkins
Metalloriboswitches: RNA-based inorganic ion sensors that regulate genes.
J Biol Chem: 2017, 292(23);9441-9450
[PubMed:28455443] [WorldCat.org] [DOI] (I p)

Phillip J McCown, Keith A Corbino, Shira Stav, Madeline E Sherlock, Ronald R Breaker
Riboswitch diversity and distribution.
RNA: 2017, 23(7);995-1011
[PubMed:28396576] [WorldCat.org] [DOI] (I p)

Christopher P Jones, Adrian R Ferré-D'Amaré
Long-Range Interactions in Riboswitch Control of Gene Expression.
Annu Rev Biophys: 2017, 46;455-481
[PubMed:28375729] [WorldCat.org] [DOI] (I p)

Maja Etzel, Mario Mörl
Synthetic Riboswitches: From Plug and Pray toward Plug and Play.
Biochemistry: 2017, 56(9);1181-1198
[PubMed:28206750] [WorldCat.org] [DOI] (I p)

Svetlana V Harbaugh, Michael S Goodson, Kateri Dillon, Sarah Zabarnick, Nancy Kelley-Loughnane
Riboswitch-Based Reversible Dual Color Sensor.
ACS Synth Biol: 2017, 6(5);766-781
[PubMed:28121427] [WorldCat.org] [DOI] (I p)

Kyle E Watters, Eric J Strobel, Angela M Yu, John T Lis, Julius B Lucks
Cotranscriptional folding of a riboswitch at nucleotide resolution.
Nat Struct Mol Biol: 2016, 23(12);1124-1131
[PubMed:27798597] [WorldCat.org] [DOI] (I p)

Anna V Sherwood, Tina M Henkin
Riboswitch-Mediated Gene Regulation: Novel RNA Architectures Dictate Gene Expression Responses.
Annu Rev Microbiol: 2016, 70;361-74
[PubMed:27607554] [WorldCat.org] [DOI] (I p)

Aiming Ren, Yi Xue, Alla Peselis, Alexander Serganov, Hashim M Al-Hashimi, Dinshaw J Patel
Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep: 2015, 13(9);1800-13
[PubMed:26655897] [WorldCat.org] [DOI] (I p)

Danielle Biscaro Pedrolli, Christian Kühm, Daniel C Sévin, Michael P Vockenhuber, Uwe Sauer, Beatrix Suess, Matthias Mack
A dual control mechanism synchronizes riboflavin and sulphur metabolism in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2015, 112(45);14054-9
[PubMed:26494285] [WorldCat.org] [DOI] (I p)

Aiming Ren, Kanagalaghatta R Rajashankar, Dinshaw J Patel
Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.
Structure: 2015, 23(8);1375-1381
[PubMed:26118534] [WorldCat.org] [DOI] (I p)

Mingxu You, Jacob L Litke, Samie R Jaffrey
Imaging metabolite dynamics in living cells using a Spinach-based riboswitch.
Proc Natl Acad Sci U S A: 2015, 112(21);E2756-65
[PubMed:25964329] [WorldCat.org] [DOI] (I p)

Jinwei Zhang, Adrian R Ferré-D'Amaré
Structure and mechanism of the T-box riboswitches.
Wiley Interdiscip Rev RNA: 2015, 6(4);419-33
[PubMed:25959893] [WorldCat.org] [DOI] (I p)

James W Nelson, Narasimhan Sudarsan, Grace E Phillips, Shira Stav, Christina E Lünse, Phillip J McCown, Ronald R Breaker
Control of bacterial exoelectrogenesis by c-AMP-GMP.
Proc Natl Acad Sci U S A: 2015, 112(17);5389-94
[PubMed:25848023] [WorldCat.org] [DOI] (I p)

Michael Dambach, Melissa Sandoval, Taylor B Updegrove, Vivek Anantharaman, L Aravind, Lauren S Waters, Gisela Storz
The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element.
Mol Cell: 2015, 57(6);1099-1109
[PubMed:25794618] [WorldCat.org] [DOI] (I p)

Kazuhiro Furukawa, Arati Ramesh, Zhiyuan Zhou, Zasha Weinberg, Tenaya Vallery, Wade C Winkler, Ronald R Breaker
Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and control expression of heavy metal transporters.
Mol Cell: 2015, 57(6);1088-1098
[PubMed:25794617] [WorldCat.org] [DOI] (I p)

Anna V Sherwood, Frank J Grundy, Tina M Henkin
T box riboswitches in Actinobacteria: translational regulation via novel tRNA interactions.
Proc Natl Acad Sci U S A: 2015, 112(4);1113-8
[PubMed:25583497] [WorldCat.org] [DOI] (I p)

José A L da Silva
From the RNA world to the RNA/protein world: contribution of some riboswitch-binding species?
J Theor Biol: 2015, 370;197-201
[PubMed:25571850] [WorldCat.org] [DOI] (I p)

Tina M Henkin
The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand.
Biochim Biophys Acta: 2014, 1839(10);959-963
[PubMed:24816551] [WorldCat.org] [DOI] (P p)

Arati Ramesh, Wade C Winkler
Metabolite-binding ribozymes.
Biochim Biophys Acta: 2014, 1839(10);989-994
[PubMed:24769284] [WorldCat.org] [DOI] (P p)