yvdD

168

putative lysine decarboxylase

locus: BSU_34640

Molecular weight: 20.91 kDa

pI: 5.09

Protein length: 191 aa

Gene length: 576 bp

function: unknown

product: unknown

essential: no

synonyms: yvdD

List of homologs in different organisms, belongs to COG1611 (Galperin et al., 2021)

Gene

Coordinates: 3,558,940 → 3,559,515

The protein

Protein family

• LOG family (single member, according to UniProt)

Structure

• [PDB|1T35]
• [AF|O06986]

Additional information

• Detected in spores. [Pubmed|12480901]

Expression and Regulation

Operons

• genes: [gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]

  description: [Pubmed|22383849]

  additional information

  • Putative NrdR-box located between [protein|search|YvdC] and [protein|search|YvdD], suggesting transcriptional regulation by NrdR ([protein|search|YtcG]). [Pubmed|15949864]

Biological materials

Mutant

• MGNA-B629 (yvdD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1628 NBRP B. subtilis, Japan]
• BKE34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE34640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
• BKK34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK34640 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT

References

• 12480901,15949864,22383849