Potential protein homologs

At Gram+ 2022 in Prague, there will be a workshop on how to get the most out of SubtiWiki. We will present newly added features. Moreover, we hope to learn from you what you would like to have added to SubtiWiki to improve it!

Potential protein homologs

Description

The following list presents the potential protein homologs for YsmB using FASTA alignment tool. For all top hits, a bidirectional analysis was performed and those showing the same pair of proteins are considered to be potential orthologs.
The column Best hit bidirectional informs if YsmB was found to be best hit in the alignment with the protein of the respective organism.

YsmB

OrganismProtein nameIdentitySimilarityBidirectional
best hit
Bacillus licheniformisYsmB83.0%95.0%Yes
Bacillus anthracisGBAA_066236.4%62.0%No
Listeria monocytogenesCAC9992831.3%67.5%No
Staphylococcus aureusSAOUHSC_0282623.9%64.1%No
Lactococcus lactisRmaI35.7%68.6%Yes
Streptococcus pneumoniaeSpr037627.3%72.7%No
Streptococcus pyogenesGGS_023025.4%65.3%No
Clostridium acetobutylicumCA_C328329.6%67.3%Yes
Mycoplasma pneumoniae No significant homolog No significant homolog
JCVI-syn3A No significant homolog No significant homolog
Corynebacterium glutamicumBAC0038225.5%67.0%No
Streptomyces coelicolorCAB9592631.4%60.8%No
Escherichia coliMarR26.4%55.0%No
Synechocystis sp.BAD0203425.7%64.2%No
Synechococcus elongatusSynpcc7942_115925.5%63.3%No
Borrelia burgdorferi No significant homolog No significant homolog