yrhF
168
unknown
locus
BSU_27210
Molecular weight
13.84 kDa
pI
6.09
function
unknown
product
unknown
essential
no
ec
null
synonyms
yrhF
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG5609 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,780,525 → 2,780,893
The protein
Structure
[AF|O05398]
Expression and Regulation
Operons
genes
[gene|CEA3119463DAA65A18F891479B955235154AE402|yrhF]
description
[Pubmed|21815947]
additional information
the mRNA is substantially stabilized upon depletion of [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [PubMed|21815947]
genes
[gene|CEA3119463DAA65A18F891479B955235154AE402|yrhF]-[gene|FA18A10769974D392247FB32A0891AE74DF248A0|yrhG]-[gene|C1EC5FB8254E9F8EF5EC02191A533FF9AB9F5D3C|S1027]-[gene|58631F28D723DD51D0BEBF905DA0963F4F16609B|S1026]-[gene|EF487D263F89F53D6A21F9B65B9D3ACAF046D474|spyT]-[gene|9B0ACF91EFB3A032A061AE420696BB357711A187|spyA]-[gene|33145376BA8037C3AD1FFBF5588EF3003AC123C9|S1024]
description
[Pubmed|40055937]
additional information
the mRNA is cleaved by [protein|172652156ABFE72D5BAAC22729CE17CA947538B5|rae1] within the [gene|9B0ACF91EFB3A032A061AE420696BB357711A187|spyA] ORF [pubmed|40055937,28363943]
the mRNA is cleaved by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] upstream of [gene|58631F28D723DD51D0BEBF905DA0963F4F16609B|S1026] and further degraded by [protein|3EB289D0F58A58C693AB588798EE66A731341999|RNase J1]to just upstream of the ribosomal binding site of [gene|EF487D263F89F53D6A21F9B65B9D3ACAF046D474|spyT] [pubmed|40055937]
Biological materials
Mutant
MGNA-A149 (yrhF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/149 NBRP B. subtilis, Japan]
BKE27210 (Δ[gene|CEA3119463DAA65A18F891479B955235154AE402|yrhF]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE27210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTGATTACCCCTTCCG, downstream forward: _UP4_TAGTATATTTGTCATTGACA
BKK27210 (Δ[gene|CEA3119463DAA65A18F891479B955235154AE402|yrhF]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK27210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTGATTACCCCTTCCG, downstream forward: _UP4_TAGTATATTTGTCATTGACA
References
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Time of last update: 2025-05-08 18:46:03
Author of last update: Melvin.boenninger